BugSeq empowers microbiology labs to detect and prevent infectious diseases with next-generation sequencing. BugSeq replaces manual, expensive pipeline creation and data analysis traditionally conducted by a bioinformatician in a time-consuming manner, with an automated, end-to-end solution hosted in the cloud. BugSeq’s reports enable clinical, public health, and biodefense laboratories to identify unknown and novel pathogens, combat antimicrobial resistance, and perform pathogen surveillance.